Scientist as Application Specialist Next Generation Sequencing (m/f/d)

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Scientist as Application Specialist Next Generation Sequencing (m/f/d)

Join to apply for the Scientist as Application Specialist Next Generation Sequencing (m/f/d) role at Max Planck Society.

The Max Planck Institute of Immunobiology and Epigenetics in Freiburg, Germany, invites applications for a scientist position in our Deep Sequencing Facility. The position is immediately available for a period of two years.

The facility offers a broad and comprehensive portfolio of next‑generation sequencing methods to support ambitious NGS projects of all research groups at our institute. As a modern core laboratory, the deep sequencing facility is equipped with cutting‑edge sample preparation and deep sequencing technology, including short‑ and long‑read sequencing systems (AVITI24, NovaSeq6000, Nanopore Sequencing) as well as robotic liquid handling devices (Biomek i7).

The Max Planck Institute of Immunobiology and Epigenetics (MPI-IE) in Freiburg, Germany, is an interdisciplinary research institution that conducts basic research in two key areas of modern biology: Immunobiology and Epigenetics. Central questions address the molecular basis of cell type identities, as they are regulated during immune cell differentiation, metabolic response, and epigenetic chromatin adaptation.

Responsibilities

Developing, implementing and refining sample preparation for sequencing workflows
Focus on single‑cell, multi‑omics and spatial approaches using diverse input material, including tissue sections
Monitoring quality, conducting data analysis and driving workflow automation with seamless integration into existing infrastructure
Collaborating closely with research groups to support epigenetics‑focused sequencing projects
Assisting the facility’s laboratory team with logistical and administrative tasks, as well as routine lab work
Maintaining and troubleshooting complex laboratory instruments
Preparing samples and executing sequencing runs

Qualifications

Academic degree and a PhD in a relevant life science discipline
Demonstrated hands‑on experience (expert level) with NGS laboratory techniques, ideally in epigenomic assays (e.g., Cut&Tag, ATAC‑Seq, single‑cell assays, spatial transcriptomics, cryosectioning)
Experience with laboratory automation systems
Expertise in NGS data analysis
Programming skills in Python or R (preferred)
Strong organizational skills and ability to support multiple research projects simultaneously
Solid knowledge of current scientific literature in the field
Fluency in English and excellent communication skills

Benefits

Payment according to TVöD up to a maximum of E13 if the collectively agreed and personal requirements are fulfilled
Social benefits in line with public service (VBL)
Additional performance‑related remuneration component
Professional training and development opportunities
Good public transport connections and subsidy for job ticket
Challenging work in a modern working environment
Mobile working at a location of your choice within Germany is possible up to a maximum of 40% of the regular weekly working hours in justified cases.
Catering provided by the institute's own cafeteria on site and shopping facilities within walking distance
Welcome‑Service
Family‑friendly offers (affiliated day care center at the institute, parent‑child room, breastfeeding room)

Diversity

We value and promote diversity, inclusion and equal opportunities, so we welcome applications from all backgrounds. We particularly welcome applications from severely disabled people. We would also like to increase the proportion of women in areas where they are underrepresented and therefore expressly encourage women to apply.

Application deadline

Have we sparked your interest? Please apply with your complete application documents (letter of motivation, curriculum vitae, certificates, contact email address of minimum one referee) via our online application portal at until 2nd February 2026.