Scientist as Application Specialist Next Generation Sequencing (m/f/div

Scientist as Application Specialist Next Generation Sequencing (m/f/div)

Join the Max Planck Institute of Immunobiology and Epigenetics in Freiburg, Germany, as an NGS specialist in our Deep Sequencing Facility.

The position is immediately available for a period of two years.

Our core portfolio offers a broad and comprehensive range of next generation sequencing methods to support ambitious projects of all research groups. As a modern core laboratory, the deep sequencing facility is equipped with cutting‑edge sample preparation and deep sequencing technology, including short‑ and long‑read sequencing systems (AVITI24, NovaSeq6000, Nanopore Sequencing) and robotic liquid handling devices (Biomek i7).

YOUR TASKS

• Develop, implement and refine sample preparation for sequencing workflows.
• Focus on single‑cell, multi‑omics and spatial approaches using diverse input material including tissue sections.
• Monitor quality, conduct data analysis and drive workflow automation for seamless integration into existing infrastructure.
• Collaborate closely with research groups to support epigenetics‑focused sequencing projects.
• Assist the facility’s laboratory team with logistical and administrative tasks, as well as routine lab work.
• Maintain and troubleshoot complex laboratory instruments.
• Prepare samples and execute sequencing runs.

YOUR QUALIFICATIONS

We are seeking a highly motivated and experienced scientist to strengthen our NGS team. The ideal candidate is a collaborative team player who can deliver high‑quality results independently and responsibly. Key requirements include:

• Academic degree and PhD in a relevant life science discipline.
• Demonstrated hands‑on experience (expert level) with NGS laboratory techniques, ideally in epigenomic assays (e.g., Cut&Tag, ATAC‑Seq, single‑cell assays, spatial transcriptomics, cryosectioning).
• Experience with laboratory automation systems.
• Expertise in NGS data analysis.
• Programming skills in Python or R (preferred).
• Strong organizational skills and ability to support multiple research projects simultaneously.
• Solid knowledge of current scientific literature in the field.
• Fluency in English and excellent communication skills.

WE OFFER

Located in a region that connects Germany, France and Switzerland, our institute offers an international research environment with outstanding infrastructure facilities and a positive working atmosphere that places a high value on work‑life balance.

• Payment according to TVöD up to a maximum of E13 if the collectively agreed and personal requirements are fulfilled.
• Social benefits in line with public service (VBL).
• Additional performance‑related remuneration component.
• Professional training and development opportunities.
• Good public transport connections and subsidy for job ticket.
• Challenging work in a modern working environment.
• Mobile working at a location of your choice within Germany is possible up to a maximum of 40% of the regular weekly working hours in justified cases.
• Catering provided by the institute’s own cafeteria on site and shopping facilities within walking distance.
• Welcome‑Service.
• Family‑friendly offers (affiliated day care center at the institute, parent‑child room, breastfeeding room).

Have we sparked your interest? Please apply with your complete application documents (letter of motivation, curriculum vitae, certificates, contact email address of at least one referee) via our online applicantion portal at until 2nd February 2026.